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Species belonging to selected taxon:
Ciona intestinalis
ABOUT THIS RECORD
ID:
MNEST024803
species:
Ciona intestinalis
miRNA family:
let-7
source:
miRBase, original name:
cin-let-7e
(
MI0007154
)
Taxonomy by NCBI:
Ciona intestinalis
Ciona
Cionidae
Phlebobranchia
Enterogona
Ascidiacea
Tunicata
Chordata
Deuterostomia
Coelomata
Bilateria
Eumetazoa
Metazoa
Fungi/Metazoa group
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGAGGTAGTTGGTTGTATCGGT
miRNA*
TATACAGCCCGCTAACTTAAC
mismatches:
2
bulges:
1
View larger
pre-miRNA
TCAGCTATTCGTGGC
TGAGGTAGTTGGTTGTATCGGT
TCCCTTGTGAAATGTTAAC
TATACAGCCCGCTAACTTAAC
CATTGGTTGCTAACTATCCAC
dot-bracket secondary structure
..(((.((..((((.
((((.((((.((((((((.(((
(..(.........)..)))
))))))))).)))).)))).)
)))..)).)))..........
SIMILARITIES
miRBase
cin-let-7d
:
2e-36
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
let-7: 7e-24
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
additional data
download this record
references
[
1
] Fu X, Adamski M, Thompson EM,
Mol Biol Evol. 25:1067-1080(2008).
,
"Altered miRNA repertoire in the simplified chordate, Oikopleura dioica"